Basic Information
Locus ID:
CQ.Regalona.r1.8BG0003370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 3763227 | 3764567 | - | CQ.Regalona.r1.8BG0003370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 49,586.28 Da | 42.14 | 105.96 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 77 | 3.42154E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 4.3E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 170 | 424 | 2.3E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 107 | 5.3E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 109 | 3.7E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 120 | 423 | 2.0E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 1.6E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 35.986073 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021726282.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology