Basic Information
Locus ID:
CQ.Regalona.r1.8BG0003080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 3458857 | 3463697 | + | CQ.Regalona.r1.8BG0003080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 71,059.47 Da | 33.57 | 101.68 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 2.0E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 166 | 182 | 0.96 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 454 | 476 | 0.0059 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 359 | 373 | 1.0 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 263 | 321 | 4.0E-13 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 527 | 585 | 3.4E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 277 | 3.91E-44 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 243 | 599 | 3.06E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 621 | 1.2E-90 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 135 | 7.1E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 328 | 1.1E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 224 | 4.5E-23 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 115 | 139 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 476 | 500 | 6.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 333 | 357 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 548 | 571 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 261 | 284 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 572 | 597 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 285 | 308 | 2.5 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 454 | 476 | 7.44243 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 287 | 308 | 7.242212 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 572 | 585 | 8.6E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 288 | 301 | 8.6E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_021726182.1 | receptor protein kinase CLAVATA1-like [Chenopodium quinoa] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QJX6 | Protein kinase domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_175840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22125, gene_22126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011420 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41641, Sgl46440 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011472 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0003080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049220 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21477 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0192, Ceq01G0193, Ceq01G0196, Ceq03G0864 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0214, Cgl01G0215, Cgl03G0944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1770, evm.TU.LG14.985 |