Basic Information
Locus ID:
CQ.Regalona.r1.8BG0002450
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 2682394 | 2697577 | + | CQ.Regalona.r1.8BG0002450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 151,911.59 Da | 41.21 | 83.56 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 230 | 496 | 6.8304E-91 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 1061 | 1161 | 3.9E-16 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 827 | 1018 | 4.0E-27 | IPR001245 |
| Pfam | PF00314 | Thaumatin family | 2 | 137 | 3.5E-34 | IPR001938 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 227 | 493 | 4.5E-47 | IPR001245 |
| Pfam | PF00314 | Thaumatin family | 540 | 748 | 2.1E-47 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 2 | 140 | 1.57E-36 | IPR037176 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 799 | 1035 | 1.28E-55 | IPR011009 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 535 | 753 | 6.15E-47 | IPR037176 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 208 | 524 | 2.02E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 1054 | 1163 | 1.2E-20 | IPR038408 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 535 | 755 | 2.9E-53 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 1 | 144 | 1.0E-37 | IPR037176 |
| Gene3D | G3DSA:3.30.430.20 | - | 1174 | 1255 | 3.6E-10 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 300 | 500 | 1.4E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 774 | 837 | 6.5E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 186 | 299 | 8.6E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 838 | 1027 | 4.1E-47 | - |
| SMART | SM00205 | tha2 | 536 | 747 | 2.3E-24 | IPR001938 |
| SMART | SM00205 | tha2 | 2 | 138 | 4.2E-14 | IPR001938 |
| SMART | SM00220 | serkin_6 | 815 | 1023 | 5.5E-11 | IPR000719 |
| SMART | SM00220 | serkin_6 | 224 | 499 | 2.2E-33 | IPR000719 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 1 | 138 | 20.328232 | IPR001938 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1169 | 1277 | 10.487308 | IPR002902 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 533 | 745 | 26.359299 | IPR001938 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1055 | 1163 | 18.905762 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 732 | 1023 | 23.170586 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 224 | 501 | 38.152626 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 345 | 357 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 868 | 880 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 230 | 252 | - | IPR017441 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 599 | 615 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 638 | 654 | 4.1E-5 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 535 | 547 | 4.1E-5 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 585 | 596 | 4.1E-5 | IPR001938 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 193 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23140.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 6. Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021766697.1 | uncharacterized protein LOC110731175 [Chenopodium quinoa] | 0 |
| Q9C5S9 | Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M241 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22061 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40868, Sbi_jg40875 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1602, Seu_jg1603, Seu_jg4259 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017178 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl46180, Sgl46197, Sgl50876, Sgl50880, Sgl50932 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010508, gene:ENSEOMG00000031315 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0002470, CQ.Regalona.r1.8BG0002450 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1797, evm.TU.LG18.811, evm.TU.LG20.1079 ... |