Basic Information
Locus ID:
CQ.Regalona.r1.8AG0019830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DNA-directed 5'-3' RNA polymerase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 58963680 | 58967681 | - | CQ.Regalona.r1.8AG0019830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 31,433.37 Da | 39.74 | 60.98 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 46 | 276 | 3.6E-76 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 171 | 268 | 3.58E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 170 | 281 | 3.9E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 176 | 269 | 25.483017 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_021741472.1 | auxin-responsive protein IAA27-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QSX7 | Auxin-responsive protein OS=Spinacia oleracea OX=3562 GN=SOVF_144580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology