Basic Information
Locus ID:
CQ.Regalona.r1.8AG0017670
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 55736728 | 55744566 | - | CQ.Regalona.r1.8AG0017670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 55,007.60 Da | 45.22 | 90.12 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 321 | 370 | 0.00153494 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 1.8E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 1.7E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 3.0E-7 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 8.96E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 377 | 6.01E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 289 | 1.7E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 143 | 1.7E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 2.0E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 0.0037 | IPR001841 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 1.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0053 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.055 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 11.983458 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.214048 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.720098 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.42232 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.80474 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.39561 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.940542 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.965 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 3.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 3.6E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021755342.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology