Basic Information
Locus ID:
CQ.Regalona.r1.8AG0016980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 54558899 | 54559273 | + | CQ.Regalona.r1.8AG0016980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.14 | 10,995.72 Da | 45.39 | 108.14 | 0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 45 | 92 | 5.3E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 100 | 3.2E-6 | IPR032675 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021756766.1 | F-box protein SKIP1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MFC5 | RNI-like superfamily protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4007 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9226 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah014957, Ah014958, Ah014963 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24752, Sbi_jg8619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19990 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022305 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42666, Sgl47400 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010769, gene:ENSEOMG00000033405 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.8AG0016970, CQ.Regalona.r1.8AG0016980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265550 |
| Apiaceae | Apium graveolens | 2 | Ag2G00406, Ag2G00407 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014620, COCNU_01G014630, scaffold003326G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722057 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G07890 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G30640.1, AT5G57900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014209m.g.v1.0, Thhalv10014217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g32280.v2.2, Sp6g19570.v2.2, Sp7g28520.v2.2 ... |
| Brassicaceae | Brassica nigra | 9 | BniB02g037230.2N, BniB02g084890.2N, BniB02g084900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2590 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2738 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g07420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-282 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.872, evm.TU.LG06.874, evm.TU.LG07.306 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01159, Lb3G16712, Lb7G33206 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.940, BH08.963, CH08.1082 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0652940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0011890.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032262, gene-QYE76_032275 |
| Poaceae | Oryza coarctata | 2 | Oco15G005320, Oco16G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g16840.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G167800, gene-BS78_K076700, gene-BS78_K105400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402798 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G003600, Chr17G003270, Chr20G008910 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG007670, gene_TRIDC1BG009770 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G056500.2, TraesCS1B02G073600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44740, nbis-gene-57102 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22736 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2558, evm.TU.LG23.788 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g13390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2165 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25319 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7509, nbisL1-mrna-7512 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4916, nbisL1-mrna-4917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1266 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000935 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17486, nbisL1-mrna-1927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-9226, nbisL1-mrna-9228 |
| Salicaceae | Populus euphratica | 1 | populus_peu05571 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602068, gene-LOC132606164, gene-LOC132630842 |
| Solanaceae | Solanum chilense | 1 | SOLCI000280200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024020 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9538 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0411 |