Basic Information
Locus ID:
CQ.Regalona.r1.8AG0016250
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 53208589 | 53221391 | - | CQ.Regalona.r1.8AG0016250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 83,327.02 Da | 51.71 | 81.68 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 229 | 1.55976E-67 | - |
| CDD | cd18794 | SF2_C_RecQ | 230 | 380 | 3.79884E-57 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 104 | 2.3E-10 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 263 | 369 | 3.2E-11 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 384 | 456 | 6.5E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 220 | 2.83E-25 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 228 | 457 | 3.97E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 230 | 474 | 2.2E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 167 | 229 | 1.4E-13 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 9 | 164 | 9.1E-39 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 238 | 3.2E-13 | IPR014001 |
| SMART | SM00490 | helicmild6 | 273 | 371 | 7.5E-15 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 179 | 484 | 1.6E-72 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 222 | 15.017149 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 411 | 13.66089 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 666 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021756684.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 3 [Chenopodium quinoa] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M8N9 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology