Basic Information
Locus ID:
CQ.Regalona.r1.8AG0014760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 50206179 | 50212147 | - | CQ.Regalona.r1.8AG0014760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 48,108.60 Da | 41.39 | 93.36 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 58 | 409 | 1.52077E-165 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 201 | 2.3E-63 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 226 | 350 | 8.1E-49 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 354 | 407 | 2.49E-8 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 350 | 1.28E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 202 | 9.7E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 225 | 417 | 1.4E-54 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 250 | 0.0091 | IPR003593 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 284 | 355 | 26.439352 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 275 | 28.929646 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 296 | 304 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 1.3E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 1.3E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 293 | 321 | 1.3E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 379 | 396 | 1.3E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 326 | 355 | 1.3E-50 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 443 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021715099.1 | DNA repair protein recA homolog 3, mitochondrial-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MGE7 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology