Basic Information
Locus ID:
CQ.Regalona.r1.8AG0014080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 48442446 | 48445181 | + | CQ.Regalona.r1.8AG0014080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 77,444.30 Da | 49.82 | 90.91 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 220 | 479 | 3.0E-56 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 39 | 121 | 3.7E-4 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 30 | 122 | 4.13E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 22 | 125 | 2.8E-8 | IPR011333 |
| SMART | SM00225 | BTB_4 | 40 | 138 | 0.0074 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 219 | 503 | 60.580898 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 40 | 104 | 9.640858 | IPR000210 |
| Coils | Coil | Coil | 574 | 608 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48130.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021751313.1 | BTB/POZ domain-containing protein At5g48130-like [Chenopodium quinoa] | 0 |
| Q9LUB9 | BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana OX=3702 GN=At5g48130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MDD6 | BTB/POZ domain-containing protein At5g48130-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37427 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20670 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015443 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25331, Sbi_jg9180 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42926, Sgl47718 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010240, gene:ENSEOMG00000034795 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0014080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017380 |
| Apiaceae | Apium graveolens | 1 | Ag2G00565 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713374 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2701.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G18325 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48130.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2291 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2382 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9813 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2215 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031835 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14654 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3516, BH03.3731, CH03.3947 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574760, gene-QOZ80_7BG0606150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0130630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040042 |
| Poaceae | Oryza coarctata | 2 | Oco13G011170, Oco14G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G330800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304655 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003350, Chr24G011260, Chr27G013870, Chr28G010450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G361800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024370, gene_TRIDC2BG028760 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G190500.2, TraesCS2B02G216500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb325790_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32781, nbis-gene-561 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5446, Zma_g6730 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1143, evm.TU.LG20.1411 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20575, nbisL1-mrna-20589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14374 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.895 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13888 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4644 |
| Salicaceae | Populus euphratica | 1 | populus_peu26926 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642346 |
| Solanaceae | Solanum chilense | 1 | SOLCI001406400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024647 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2204 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0192 |