Basic Information
Locus ID:
CQ.Regalona.r1.8AG0008240
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 13354207 | 13357549 | + | CQ.Regalona.r1.8AG0008240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 58,550.44 Da | 40.30 | 81.57 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00439 | Bromodomain | 138 | 221 | 2.0E-21 | IPR001487 |
| SUPERFAMILY | SSF47370 | Bromodomain | 130 | 234 | 1.83E-33 | IPR036427 |
| Gene3D | G3DSA:1.20.920.10 | - | 104 | 256 | 9.9E-35 | IPR036427 |
| SMART | SM00297 | bromo_6 | 127 | 237 | 2.2E-29 | IPR001487 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 146 | 218 | 18.0464 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 165 | 181 | 9.4E-15 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 199 | 218 | 9.4E-15 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 181 | 199 | 9.4E-15 | IPR001487 |
| Coils | Coil | Coil | 414 | 438 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46550.1 | DNA-binding bromodomain-containing protein. | 0 |
| RefSeq | XP_021764190.1 | transcription factor GTE9-like [Chenopodium quinoa] | 0 |
| Q9LS28 | Transcription factor GTE12 OS=Arabidopsis thaliana OX=3702 GN=GTE12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MV95 | Bromo domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22407 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016705 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg15754, Sbi_jg40281, Sbi_jg40296, Sbi_jg50275 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg13767, Seu_jg1860, Seu_jg1875, Seu_jg1876, Seu_jg1877 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011457, GOSA_00011458, GOSA_00011459 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl41668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010899, gene:ENSEOMG00000034929 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008240, CQ.Regalona.r1.8BG0008840 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071030 |
| Apiaceae | Apium graveolens | 5 | Ag4G01483, Ag4G01484, Ag5G02180, Ag6G01096, Ag7G00859 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012290, scaffold000006G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707184 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1149.V1.1, AsparagusV1_07.3811.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G16699, Ftri18G30349 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000859m.g.v1.0, Thhalv10011031m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB03g027770.2N, BniB04g010930.2N, BniB04g058530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1009 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1139 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06680 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0086s00023.v1.0, Dusal.0806s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.730 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038410 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37935, Lb1G00204, Lb1G00205, Lb2G13413 |
| Poaceae | Echinochloa crus-galli | 8 | AH03.3106, AH04.450, AH07.111, BH03.3292, BH04.490, BH09.6 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671130, gene-QOZ80_9BG0694550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0747990.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009913, gene-QYE76_068437 |
| Poaceae | Oryza coarctata | 2 | Oco13G008220, Oco14G008690 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G288400, gene-BS78_05G083300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401502, Pt_Chr0501816, Pt_Chr0501878 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr07G020490, Chr16G010250, Chr17G009340, Chr19G005900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G940100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG075220 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G539800.2, TraesCS7B02G461100.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb091620_P002, Zm00001eb200990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27162, nbis-gene-51506 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17634, Zma_g18486 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.Contig8.16, evm.TU.LG10.1109, evm.TU.LG18.221 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19090 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.842, evm.TU.Scaffold_16_RagTag.747 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24920 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4176, nbisL1-mrna-5497 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17168, nbisL1-mrna-19140 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.58 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012200, Maker00016195 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-122, nbisL1-mrna-15905 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10374, nbisL1-mrna-23785 |
| Salicaceae | Populus euphratica | 2 | populus_peu00958, populus_peu17955 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621115 |
| Solanaceae | Solanum chilense | 1 | SOLCI004832400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011758 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17985_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1822 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07120.v3.1, Zosma01g34590.v3.1 |