Basic Information
Locus ID:
CQ.Regalona.r1.8AG0007270
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 10732513 | 10736396 | + | CQ.Regalona.r1.8AG0007270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 25,710.95 Da | 43.59 | 82.44 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 110 | 166 | 1.3E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 169 | 5.3E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 176 | 8.0E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 109 | 167 | 6.8E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 102 | 173 | 17.707317 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021772026.1 | uncharacterized protein LOC110736175 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QVC1 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_137110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology