Basic Information
Locus ID:
CQ.Regalona.r1.8AG0005430
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 7081843 | 7106751 | + | CQ.Regalona.r1.8AG0005430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 192,729.34 Da | 36.48 | 85.69 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 338 | 632 | 9.17188E-55 | - |
| Pfam | PF00153 | Mitochondrial carrier protein | 853 | 928 | 8.7E-7 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1482 | 1544 | 2.4E-6 | IPR018108 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 549 | 0.0064 | IPR001680 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1262 | 1344 | 6.5E-12 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 969 | 1039 | 1.9E-9 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1553 | 1633 | 1.3E-12 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 760 | 831 | 1.8E-7 | IPR018108 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 383 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 9.8E-6 | IPR001680 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1366 | 1454 | 9.1E-11 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1056 | 1134 | 2.6E-6 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 1653 | 1724 | 3.8E-7 | IPR018108 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 969 | 1180 | 3.14E-27 | IPR023395 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 1261 | 1544 | 1.44E-43 | IPR023395 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 629 | 6.23E-57 | IPR036322 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 1549 | 1724 | 1.7E-29 | IPR023395 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 751 | 940 | 6.54E-24 | IPR023395 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 965 | 1196 | 1.6E-25 | IPR023395 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 651 | 8.0E-27 | IPR015943 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 1255 | 1549 | 7.2E-48 | IPR023395 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 1550 | 1725 | 5.8E-32 | IPR023395 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 758 | 958 | 7.4E-21 | IPR023395 |
| Gene3D | G3DSA:2.130.10.10 | - | 331 | 475 | 1.1E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 469 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 508 | 22.0 | IPR001680 |
| SMART | SM00667 | Lish | 10 | 42 | 0.003 | IPR006594 |
| SMART | SM00320 | WD40_4 | 595 | 634 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 7.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 592 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 549 | 1.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 478 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1644 | 1725 | 11.571929 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1261 | 1350 | 16.978111 | IPR018108 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 471 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 426 | 11.708317 | - |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1359 | 1461 | 11.614836 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1546 | 1638 | 18.715813 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 962 | 1048 | 14.768441 | IPR018108 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 426 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 10 | 42 | 9.295118 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 392 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 748 | 841 | 13.996129 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1062 | 1149 | 9.061916 | IPR018108 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 456 | 470 | - | IPR019775 |
| PRINTS | PR00926 | Mitochondrial carrier protein signature | 1325 | 1345 | 9.1E-15 | IPR002067 |
| PRINTS | PR00926 | Mitochondrial carrier protein signature | 1370 | 1388 | 9.1E-15 | IPR002067 |
| PRINTS | PR00926 | Mitochondrial carrier protein signature | 1275 | 1289 | 9.1E-15 | IPR002067 |
| PRINTS | PR00926 | Mitochondrial carrier protein signature | 1473 | 1495 | 9.1E-15 | IPR002067 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 201 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021740613.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LQ01 | ADP,ATP carrier protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology