Basic Information
Locus ID:
CQ.Regalona.r1.8AG0004480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 5685919 | 5703922 | + | CQ.Regalona.r1.8AG0004480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 136,552.69 Da | 45.49 | 75.55 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 511 | 816 | 4.05756E-89 | - |
| CDD | cd18793 | SF2_C_SNF | 1089 | 1196 | 1.6294E-54 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 932 | 968 | 8.7E-6 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1085 | 1186 | 1.2E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 531 | 894 | 4.7E-70 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 928 | 975 | 3.33E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 825 | 1243 | 6.58E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 498 | 816 | 1.39E-43 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 927 | 983 | 4.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 829 | 926 | 1.5E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 663 | 1.2E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 664 | 828 | 2.3E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 999 | 1243 | 1.2E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 507 | 795 | 2.4E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 932 | 970 | 3.5E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1103 | 1186 | 7.8E-20 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 932 | 968 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1080 | 1239 | 15.3987 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 526 | 778 | 13.451586 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 947 | 956 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 594 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPR1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology