Basic Information
Locus ID:
CQ.Regalona.r1.8AG0003950
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 4869149 | 4875409 | - | CQ.Regalona.r1.8AG0003950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 65,269.79 Da | 42.05 | 94.30 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 17 | 57 | 9.8E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 76 | 122 | 4.6E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 33 | 547 | 7.59E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 55 | 1.2E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 56 | 582 | 3.1E-169 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 490 | 514 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 139 | 164 | 30.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 323 | 346 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 441 | 464 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 381 | 405 | 11.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021740438.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LPL6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology