Basic Information
Locus ID:
CQ.Regalona.r1.8AG0002470
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 3073992 | 3078962 | + | CQ.Regalona.r1.8AG0002470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 75,116.98 Da | 36.84 | 88.82 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 367 | 633 | 3.33238E-97 | - |
| Pfam | PF00314 | Thaumatin family | 51 | 267 | 1.0E-58 | IPR001938 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 364 | 630 | 3.0E-47 | IPR001245 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 45 | 268 | 4.58E-63 | IPR037176 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 364 | 663 | 2.13E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 437 | 637 | 3.6E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 349 | 436 | 1.1E-29 | - |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 45 | 267 | 3.3E-66 | IPR037176 |
| SMART | SM00205 | tha2 | 47 | 267 | 6.3E-60 | IPR001938 |
| SMART | SM00220 | serkin_6 | 361 | 636 | 6.5E-29 | IPR000719 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 44 | 267 | 33.111771 | IPR001938 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 361 | 636 | 37.134979 | IPR000719 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 106 | 122 | - | IPR017949 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 482 | 494 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 367 | 389 | - | IPR017441 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 46 | 58 | 3.0E-16 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 71 | 80 | 3.0E-16 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 145 | 161 | 3.0E-16 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 92 | 103 | 3.0E-16 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 257 | 266 | 3.0E-16 | IPR001938 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 318 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23140.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 6. Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021719634.1 | cysteine-rich receptor-like protein kinase 15 [Chenopodium quinoa] | 0 |
| Q9C5S9 | Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M241 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22061 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40868, Sbi_jg40875 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1602, Seu_jg1603, Seu_jg4259 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017178 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl46180, Sgl46197, Sgl50876, Sgl50880, Sgl50932 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010508, gene:ENSEOMG00000031315 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0002470, CQ.Regalona.r1.8BG0002450 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1797, evm.TU.LG18.811, evm.TU.LG20.1079 ... |