Basic Information
Locus ID:
CQ.Regalona.r1.7BG0025900
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Eukaryotic translation initiation factor 2 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 75407283 | 75414505 | - | CQ.Regalona.r1.7BG0025900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 28,871.40 Da | 52.19 | 84.08 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01873 | Domain found in IF2B/IF5 | 133 | 233 | 3.1E-23 | IPR002735 |
| SUPERFAMILY | SSF75689 | Zinc-binding domain of translation initiation factor 2 beta | 204 | 239 | 6.8E-10 | IPR016190 |
| SUPERFAMILY | SSF100966 | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 110 | 207 | 1.12E-19 | IPR016189 |
| Gene3D | G3DSA:3.30.30.170 | - | 108 | 240 | 1.7E-34 | - |
| SMART | SM00653 | eIF2Bneu4 | 135 | 234 | 1.0E-34 | IPR002735 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20920.2 | eukaryotic translation initiation factor 2 beta subunit. protein synthesis initiation factor eIF2 beta | 0 |
| RefSeq | XP_021723301.1 | eukaryotic translation initiation factor 2 subunit beta-like isoform X1 [Chenopodium quinoa] | 0 |
| Q41969 | Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana OX=3702 GN=EIF2B PE=1 SV=3 | 0 | |
| TrEMBL | A0A803MI41 | eIF2B_5 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14687, jg35709 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16091, gene_17104 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah011512, Ah017538, Ah025298, Ah031565, Ah031566, Ah032159 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038680 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg2123, Sbi_jg30102, Sbi_jg34382, Sbi_jg40132 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1702, Seu_jg18349, Seu_jg2643 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004124, GOSA_00011313 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl46304, Sgl51020, Sgl66111, Sgl70427 |
| Amaranthaceae | Chenopodium album | 11 | gene:ENSEOMG00000003222, gene:ENSEOMG00000005402 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2AG0003170, CQ.Regalona.r1.6AG0015320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30095010, pistato.v30269370 |
| Apiaceae | Apium graveolens | 2 | Ag1G01171, Ag7G00132 |
| Arecaceae | Cocos nucifera | 2 | COCNU_16G005660, contig69425917G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706238, gene-LOC103722171 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.732.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G30945, Ftri9G10289 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G07920.1, AT5G01940.1, AT5G20920.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014385m.g.v1.0, Thhalv10014626m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03660.v2.2, Sp6g23600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042020.2N, BniB05g042650.2N, BniB08g046610.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G0687, Ceq05G0954, Ceq08G2457 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0787, Cgl08G2692 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0119s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g30480, gene.Thate02g30500, gene.Thate04g21360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8740, nbisL1-mrna-8744 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG01.529, evm.TU.LG01.530, evm.TU.LG01.531 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007646, Pov_00036728 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G21416, Lb4G25700 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3741, AH03.4074, BH01.4090, BH03.4412, CH01.4354 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0247140, gene-QOZ80_3BG0281100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0111800.1, HORVU.MOREX.r3.4HG0378950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038699 |
| Poaceae | Oryza coarctata | 4 | Oco05G012810, Oco06G013680, Oco13G015960, Oco14G016770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g21550.1, LOC_Os07g48300.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G364000, gene-BS78_02G391900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102633, Pt_Chr0602298 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G034040, Chr04G010660, Chr07G001280, Chr0G002450 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G227300, Tel4E01G310100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG012400, gene_TRIDC2BG015180 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G104200.1, TraesCS2B02G121200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015940_P001, Zm00001eb111600_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1683, nbis-gene-33255, nbis-gene-3369 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1265, Zma_g3689, Zma_g5795, Zma_g7086 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.203, evm.TU.LG10.76, evm.TU.LG15.761 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g06800, gene.Posoc04g06820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24342 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19617 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19670 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.383, evm.TU.utg000027l.326 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015397, Maker00018159 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11891 |
| Salicaceae | Populus euphratica | 1 | populus_peu14527 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606643, gene-LOC132622035 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023729 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9748_chr06_+, gene_5727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2353, TC09G2470 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02900.v3.1 |