Basic Information
Locus ID:
CQ.Regalona.r1.7BG0024510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 72982007 | 72985264 | - | CQ.Regalona.r1.7BG0024510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 51,394.24 Da | 41.64 | 78.50 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 332 | 366 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 327 | 0.006 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 206 | 4.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 454 | 3.84E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 93 | 291 | 2.4E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 467 | 2.8E-27 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 7 | 56 | 5.8E-6 | - |
| SMART | SM00320 | WD40_4 | 290 | 327 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 367 | 0.0051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 414 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 3.2E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 136 | 162 | 0.004 | IPR000571 |
| SMART | SM00320 | WD40_4 | 209 | 244 | 220.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 53 | 0.0013 | IPR000571 |
| SMART | SM00320 | WD40_4 | 417 | 454 | 46.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 13.713346 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 136 | 163 | 12.473984 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 297 | 336 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 297 | 330 | 10.205597 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 314 | 328 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 354 | 368 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 193 | 207 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 314 | 328 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 101 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021731198.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology