Basic Information
Locus ID:
CQ.Regalona.r1.7BG0021270
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
lysyl-trna synthetase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 63190000 | 63208819 | + | CQ.Regalona.r1.7BG0021270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 133,896.48 Da | 40.15 | 85.58 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07397 | MPP_NostocDevT-like | 883 | 1120 | 1.69937E-117 | IPR027629 |
| CDD | cd04322 | LysRS_N | 741 | 828 | 5.73952E-26 | IPR044136 |
| Pfam | PF01336 | OB-fold nucleic acid binding domain | 742 | 816 | 1.6E-10 | IPR004365 |
| Pfam | PF00152 | tRNA synthetases class II (D, K and N) | 281 | 587 | 1.3E-59 | IPR004364 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 882 | 1093 | 2.0E-10 | IPR004843 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 695 | 829 | 2.06E-21 | IPR012340 |
| SUPERFAMILY | SSF55681 | Class II aaRS and biotin synthetases | 281 | 587 | 4.98E-79 | - |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 202 | 254 | 2.69E-7 | IPR012340 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 879 | 1096 | 1.29E-21 | IPR029052 |
| Gene3D | G3DSA:3.60.21.10 | - | 880 | 1149 | 2.1E-9 | IPR029052 |
| Gene3D | G3DSA:2.40.50.140 | - | 693 | 830 | 5.2E-31 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 191 | 254 | 1.1E-11 | - |
| Gene3D | G3DSA:3.30.930.10 | Bira Bifunctional Protein; Domain 2 | 280 | 606 | 6.4E-99 | - |
| TIGRFAM | TIGR04168 | TIGR04168: TIGR04168 family protein | 903 | 1156 | 2.0E-87 | IPR027629 |
| ProSiteProfiles | PS50862 | Aminoacyl-transfer RNA synthetases class-II family profile. | 281 | 586 | 20.166897 | IPR006195 |
| PRINTS | PR00982 | Lysyl-tRNA synthetase signature | 475 | 491 | 7.6E-19 | IPR018149 |
| PRINTS | PR00982 | Lysyl-tRNA synthetase signature | 338 | 355 | 7.6E-19 | IPR018149 |
| PRINTS | PR00982 | Lysyl-tRNA synthetase signature | 320 | 333 | 7.6E-19 | IPR018149 |
| Coils | Coil | Coil | 526 | 546 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11710.1 | lysyl-tRNA synthetase 1. | 0 |
| RefSeq | XP_021730036.1 | uncharacterized protein LOC110697010 [Chenopodium quinoa] | 0 |
| Q6F2U9 | Lysine--tRNA ligase OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0586800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QRP3 | Lysine--tRNA ligase OS=Spinacia oleracea OX=3562 GN=SOVF_148590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31566, jg33586, jg40982, jg40983 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8909 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192450 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25418 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg19332, Seu_jg7396, Seu_jg7399, Seu_jg7400 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011116 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02567, Sgl07722, Sgl41833, Sgl46633 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006496, gene:ENSEOMG00000022508 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.5AG0017320, CQ.Regalona.r1.5AG0017330 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30223200, pistato.v30266090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00444 |
| Arecaceae | Cocos nucifera | 1 | contig69463550G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724251 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.772.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G12752 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58200.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014084m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g037740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2665 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0107s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25170 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.245 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00408 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.548, BH06.595, CH06.610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511210, gene-QOZ80_6BG0463230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658760.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G003800, Oco12G003790 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405237, Pt_Chr0405260 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G002820, Chr21G002000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G297300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG017820, gene_TRIDC7BG007200 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G048800.1, TraesCS7D02G147800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb374780_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5004 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1087, evm.TU.LG20.784 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g18390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.145 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13933 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13179, nbisL1-mrna-21266 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16580, nbisL1-mrna-4954 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.91 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16678, nbisL1-mrna-1890 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14536 |
| Salicaceae | Populus euphratica | 3 | populus_peu05628, populus_peu12261, populus_peu12269 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603023, gene-LOC132603029 |
| Solanaceae | Solanum chilense | 1 | SOLCI002277500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8137 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1113 |