Basic Information
Locus ID:
CQ.Regalona.r1.7BG0019300
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 46684558 | 46688107 | + | CQ.Regalona.r1.7BG0019300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 87,565.22 Da | 46.56 | 70.88 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 713 | 765 | 0.00826342 | - |
| CDD | cd05162 | PWWP | 163 | 244 | 5.74521E-26 | - |
| Pfam | PF00855 | PWWP domain | 165 | 245 | 2.4E-15 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 160 | 272 | 2.05E-24 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 695 | 781 | 1.36E-6 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 152 | 255 | 1.1E-21 | - |
| SMART | SM00293 | PWWP_4 | 163 | 224 | 3.4E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 165 | 226 | 14.555655 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 475 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021765853.1 | uncharacterized protein LOC110730374 [Chenopodium quinoa] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N3E1 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology