Basic Information
Locus ID:
CQ.Regalona.r1.7BG0019270
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 46224218 | 46239621 | + | CQ.Regalona.r1.7BG0019270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 175,480.67 Da | 47.50 | 92.80 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1191 | 1585 | 2.02414E-113 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1237 | 1587 | 4.6E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1184 | 1580 | 7.72E-90 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 552 | 9.22E-39 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 557 | 7.5E-49 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1473 | 1585 | 7.4E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1137 | 1366 | 1.4E-38 | - |
| SMART | SM00119 | hect_3 | 1203 | 1587 | 1.1E-95 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1205 | 1587 | 60.58255 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021765852.1 | E3 ubiquitin-protein ligase UPL4-like [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N3D8 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology