Basic Information
Locus ID:
CQ.Regalona.r1.7BG0018190
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 36577283 | 36585604 | + | CQ.Regalona.r1.7BG0018190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 53,684.55 Da | 53.49 | 84.10 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 248 | 296 | 6.21269E-16 | - |
| Pfam | PF12906 | RING-variant domain | 248 | 295 | 1.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 299 | 1.2E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 303 | 4.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 247 | 296 | 4.9E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 240 | 302 | 19.979101 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021745417.1 | E3 ubiquitin-protein ligase MARCH7-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803NAV5 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology