Basic Information
Locus ID:
CQ.Regalona.r1.7BG0017610
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 29386991 | 29407596 | + | CQ.Regalona.r1.7BG0017610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 93,057.10 Da | 33.90 | 84.60 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 426 | 476 | 1.2E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 492 | 533 | 6.3E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 262 | 317 | 1.1E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 718 | 809 | 9.65E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 566 | 619 | 3.77E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 487 | 536 | 1.21E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 563 | 624 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 712 | 814 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 480 | 561 | 1.4E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 492 | 533 | 1.6E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 565 | 622 | 0.0031 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 490 | 535 | 10.1486 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 563 | 624 | 8.5466 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 493 | 532 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 125 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021716692.1 | uncharacterized protein LOC110684560 isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N8F8 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology