Basic Information
Locus ID:
CQ.Regalona.r1.7BG0016230
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 20663640 | 20666065 | - | CQ.Regalona.r1.7BG0016230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 74,907.91 Da | 40.61 | 85.31 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 195 | 232 | 2.31365E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 405 | 650 | 5.9E-41 | IPR000719 |
| Pfam | PF01476 | LysM domain | 196 | 239 | 4.8E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 650 | 1.12E-63 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 668 | 1.4E-54 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 194 | 246 | 4.0E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 346 | 438 | 1.7E-13 | - |
| SMART | SM00257 | LysM_2 | 58 | 105 | 13.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 195 | 239 | 0.0085 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 194 | 238 | 10.183346 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 365 | 654 | 33.530807 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021746439.1 | protein LYK5-like [Chenopodium quinoa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NB60 | Protein LYK5-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology