Basic Information
Locus ID:
CQ.Regalona.r1.7BG0015890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 19394400 | 19405385 | - | CQ.Regalona.r1.7BG0015890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 33,909.04 Da | 50.14 | 54.81 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 172 | 216 | 6.3E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 39 | 119 | 1.3E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 221 | 278 | 4.5E-25 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 220 | 7.88E-12 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 110 | 167 | 1.24E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 36 | 108 | 1.1E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 219 | 9.9E-13 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 245 | 288 | 1.8E-18 | - |
| SMART | SM00184 | ring_2 | 174 | 216 | 3.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 174 | 217 | 11.81064 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 32 | 107 | 24.51741 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 109 | 173 | 31.481291 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021763088.1 | E3 ubiquitin-protein ligase MIEL1-like [Chenopodium quinoa] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9P2 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology