Basic Information
Locus ID:
CQ.Regalona.r1.7BG0013630
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 14675203 | 14684279 | + | CQ.Regalona.r1.7BG0013630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 168,536.34 Da | 39.06 | 106.97 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 829 | 7.42245E-104 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 316 | 603 | 1.08177E-106 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 953 | 1253 | 5.36743E-92 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1276 | 1496 | 1.76595E-124 | - |
| Pfam | PF00005 | ABC transporter | 1295 | 1443 | 1.6E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 955 | 1197 | 2.6E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 319 | 583 | 9.6E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 2.6E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1270 | 1506 | 6.68E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 304 | 609 | 1.57E-39 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 850 | 5.33E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 952 | 1261 | 4.05E-49 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 609 | 870 | 3.3E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1262 | 1513 | 6.9E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 299 | 608 | 1.5E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 914 | 1259 | 5.9E-60 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1304 | 1489 | 6.7E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 656 | 837 | 1.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 22.322371 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 955 | 1209 | 35.407871 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1278 | 1512 | 17.840601 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 318 | 595 | 37.7542 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| Coils | Coil | Coil | 476 | 496 | - | - |
| Coils | Coil | Coil | 907 | 931 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021763323.1 | ABC transporter C family member 5-like [Chenopodium quinoa] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LAB7 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology