Basic Information
Locus ID:
CQ.Regalona.r1.7BG0013400
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 14343421 | 14351831 | + | CQ.Regalona.r1.7BG0013400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 61,855.90 Da | 40.86 | 88.75 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 240 | 534 | 2.70834E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 363 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 492 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 534 | 9.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 275 | 2.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 234 | 534 | 1.16E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 375 | 547 | 1.6E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 374 | 4.1E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 495 | 535 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 406 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 492 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 446 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 364 | 1.3E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 74 | 131 | 0.0013 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 276 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 329 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 74 | 131 | 9.434713 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 41 | 73 | 8.83562 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 502 | 534 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 502 | 534 | 11.233774 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 324 | 10.68014 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021763349.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology