Basic Information
Locus ID:
CQ.Regalona.r1.7BG0012320
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 12710696 | 12713557 | - | CQ.Regalona.r1.7BG0012320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 39,373.08 Da | 65.46 | 70.90 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 308 | 345 | 1.13156E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 307 | 349 | 3.6E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 352 | 1.34E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 356 | 5.0E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 308 | 345 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 308 | 346 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 167 | - | - |
| Coils | Coil | Coil | 278 | 299 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13100.4 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021763474.1 | uncharacterized protein LOC110728136 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology