Basic Information
Locus ID:
CQ.Regalona.r1.7BG0010290
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 10342300 | 10349399 | - | CQ.Regalona.r1.7BG0010290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 166,531.33 Da | 39.38 | 106.65 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 921 | 1215 | 4.31597E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 620 | 820 | 1.20568E-110 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 307 | 594 | 5.31468E-94 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1238 | 1458 | 1.95507E-120 | - |
| Pfam | PF00005 | ABC transporter | 1257 | 1405 | 1.1E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 305 | 573 | 5.4E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 638 | 772 | 2.0E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 923 | 1164 | 2.5E-31 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 921 | 1221 | 7.06E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1233 | 1469 | 8.28E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 842 | 2.4E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 605 | 1.44E-32 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 282 | 602 | 5.5E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 604 | 855 | 1.1E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 886 | 1221 | 4.5E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1223 | 1476 | 1.6E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1266 | 1458 | 2.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 647 | 820 | 3.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1240 | 1474 | 19.141115 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 923 | 1203 | 37.607792 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 306 | 586 | 32.466404 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 620 | 843 | 22.742537 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 745 | 759 | - | IPR017871 |
| Coils | Coil | Coil | 467 | 487 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology