Basic Information
Locus ID:
CQ.Regalona.r1.7BG0010280
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 10333065 | 10344393 | + | CQ.Regalona.r1.7BG0010280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 161,917.16 Da | 34.99 | 105.74 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 575 | 775 | 3.51333E-108 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 262 | 549 | 1.98408E-91 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1197 | 1417 | 9.11297E-118 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 878 | 1175 | 9.45028E-81 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1216 | 1364 | 6.6E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 997 | 1135 | 3.7E-14 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 593 | 727 | 4.2E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 263 | 528 | 8.8E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 880 | 978 | 8.5E-10 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 865 | 1349 | 4.32E-44 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1192 | 1425 | 3.22E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 249 | 560 | 1.28E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 571 | 797 | 3.66E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1182 | 1435 | 2.2E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 843 | 1181 | 4.3E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 234 | 556 | 6.7E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 809 | 3.2E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 602 | 775 | 5.8E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1225 | 1417 | 2.8E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 880 | 1175 | 33.215557 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 577 | 798 | 22.602482 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1201 | 1433 | 17.627184 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 261 | 541 | 31.346481 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 700 | 714 | - | IPR017871 |
| Coils | Coil | Coil | 422 | 442 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021731882.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN55 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology