Basic Information
Locus ID:
CQ.Regalona.r1.7BG0009780
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 9823990 | 9835488 | + | CQ.Regalona.r1.7BG0009780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 137,480.64 Da | 46.63 | 76.29 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 668 | 800 | 3.10787E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 465 | 667 | 1.47317E-104 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 685 | 790 | 1.4E-17 | IPR001650 |
| Pfam | PF09382 | RQC domain | 891 | 1007 | 1.2E-19 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 479 | 647 | 3.5E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1051 | 1118 | 3.9E-14 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 802 | 883 | 2.3E-16 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1049 | 1124 | 2.01E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 933 | 4.33E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 452 | 809 | 2.78E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 440 | 667 | 3.9E-92 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 668 | 886 | 3.7E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 887 | 1003 | 7.4E-17 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1042 | 1129 | 2.5E-20 | IPR044876 |
| SMART | SM00956 | RQC_2 | 893 | 1004 | 8.0E-25 | IPR018982 |
| SMART | SM00490 | helicmild6 | 710 | 791 | 1.3E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1046 | 1128 | 8.5E-7 | IPR002121 |
| SMART | SM00487 | ultradead3 | 473 | 676 | 9.0E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 469 | 944 | 2.0E-163 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 682 | 846 | 18.998806 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1046 | 1128 | 17.245638 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 700 | 742 | 9.728662 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 485 | 660 | 21.430296 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 599 | 608 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1042 | - | - |
| Coils | Coil | Coil | 308 | 328 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021736695.1 | ATP-dependent DNA helicase Q-like 4A [Chenopodium quinoa] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LN05 | DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology