Basic Information
Locus ID:
CQ.Regalona.r1.7BG0009510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 9542079 | 9543389 | + | CQ.Regalona.r1.7BG0009510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 51,140.61 Da | 51.96 | 74.61 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 19 | 58 | 5.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 82 | 9.55E-9 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 120 | 298 | 1.2E-11 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 403 | - | - |
| Coils | Coil | Coil | 370 | 400 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33530.1 | F-box family protein. | 0 |
| RefSeq | XP_021736525.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9C800 | Putative F-box protein At1g33530 OS=Arabidopsis thaliana OX=3702 GN=At1g33530 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803LMY0 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 14 | Ah010513, Ah010514, Ah010515, Ah010517, Ah010518, Ah010519 ... |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11619 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014872, gene:ENSEOMG00000039400 ... |
| Amaranthaceae | Chenopodium quinoa | 12 | CQ.Regalona.r1.7BG0009460, CQ.Regalona.r1.7BG0009480 ... |