Basic Information
Locus ID:
CQ.Regalona.r1.7BG0009440
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 9472674 | 9479194 | - | CQ.Regalona.r1.7BG0009440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 56,742.59 Da | 39.93 | 90.26 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 267 | 303 | 0.0013 | IPR001810 |
| Pfam | PF00646 | F-box domain | 9 | 46 | 5.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 266 | 332 | 4.71E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 75 | 8.11E-11 | IPR036047 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 0.23 | IPR001810 |
| SMART | SM00256 | fbox_2 | 266 | 307 | 1.8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 363 | 482 | 2.7E-10 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021736518.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LMX1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 4 | Ah006920, Ah010347, Ah010827, Ah037108 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg46576 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl70951, Sgl74470, Sgl74565 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019836, gene:ENSEOMG00000020147 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0025030, CQ.Regalona.r1.4BG0008370 ... |