Basic Information
Locus ID:
CQ.Regalona.r1.7BG0009230
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 9236814 | 9243430 | - | CQ.Regalona.r1.7BG0009230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 114,394.64 Da | 40.18 | 95.29 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 468 | 505 | 3.3E-7 | IPR001810 |
| Pfam | PF00646 | F-box domain | 129 | 164 | 5.7E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 126 | 166 | 3.66E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 458 | 518 | 1.22E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 453 | 506 | 5.6E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 115 | 167 | 4.9E-10 | - |
| SMART | SM00256 | fbox_2 | 133 | 174 | 3.2E-5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 472 | 512 | 1.3E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 127 | 181 | 10.027357 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 466 | 514 | 10.265807 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021738435.1 | F-box/LRR-repeat protein At2g42720-like [Chenopodium quinoa] | 0 |
| O22232 | Putative F-box/LRR-repeat protein At3g44810 OS=Arabidopsis thaliana OX=3702 GN=At3g44810 PE=4 SV=2 | 0 | |
| TrEMBL | A0A803LNQ7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 6 | Ah003362, Ah004975, Ah010432, Ah010433, Ah011144, Ah028126 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g112770, BVRB_5g112780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42324, Sbi_jg44916 |
| Amaranthaceae | Suaeda glauca | 14 | Sgl35055, Sgl35076, Sgl35086, Sgl40446, Sgl40461, Sgl40471 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000002595, gene:ENSEOMG00000008169 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4BG0001260, CQ.Regalona.r1.4BG0001450 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G01722, Ag3G02802, Ag9G02757 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000298, Pov_00000300, Pov_00025260 |