Basic Information
Locus ID:
CQ.Regalona.r1.7BG0007220
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 7312261 | 7318702 | - | CQ.Regalona.r1.7BG0007220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 24,798.58 Da | 49.13 | 49.21 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 141 | 189 | 3.9E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 24 | 136 | 3.7E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 193 | 9.75E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 203 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 135 | 3.7E-30 | IPR043151 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 1.2E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.1E-42 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.223 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.539238 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021738666.1 | chromatin remodeling protein SHL-like [Chenopodium quinoa] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPA1 | Chromatin remodeling protein SHL-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology