Basic Information
Locus ID:
CQ.Regalona.r1.7BG0002930
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 2903827 | 2914846 | - | CQ.Regalona.r1.7BG0002930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 201,690.44 Da | 47.30 | 83.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1453 | 1873 | 7.83866E-121 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1500 | 1878 | 2.3E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1446 | 1871 | 4.84E-96 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 168 | 638 | 1.69E-40 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 157 | 478 | 3.4E-51 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 519 | 647 | 1.6E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1752 | 1876 | 5.1E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1395 | 1641 | 2.8E-45 | - |
| SMART | SM00185 | arm_5 | 326 | 364 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 200 | 241 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 283 | 323 | 88.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1464 | 1878 | 1.1E-85 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1579 | 1878 | 55.467308 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1265 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1123 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1002 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1034 | 1048 | - | - |
| Coils | Coil | Coil | 662 | 682 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021775478.1 | E3 ubiquitin-protein ligase UPL3-like [Chenopodium quinoa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LGE5 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology