Basic Information
Locus ID:
CQ.Regalona.r1.7BG0002860
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 2826644 | 2837047 | + | CQ.Regalona.r1.7BG0002860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 64,215.49 Da | 42.49 | 76.36 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00371 | HMA | 29 | 89 | 1.53499E-11 | IPR006121 |
| Pfam | PF00403 | Heavy-metal-associated domain | 32 | 86 | 7.0E-10 | IPR006121 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 410 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 453 | 0.096 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 553 | 3.4E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 192 | 262 | 2.8E-25 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 497 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 282 | 558 | 2.52E-49 | IPR036322 |
| SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 21 | 92 | 1.07E-10 | IPR036163 |
| Gene3D | G3DSA:3.30.70.100 | - | 22 | 89 | 2.7E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 172 | 568 | 1.4E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 457 | 497 | 5.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 453 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 361 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 410 | 5.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 499 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 464 | 499 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 419 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 555 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 370 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 413 | 9.309238 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 364 | 9.045603 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 348 | 362 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 484 | 498 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 348 | 362 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 440 | 454 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 484 | 498 | 3.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_021775384.1 | WD-40 repeat-containing protein MSI2-like [Chenopodium quinoa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LGD6 | CAF1C_H4-bd domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology