Basic Information
Locus ID:
CQ.Regalona.r1.7AG0021940
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 61557966 | 61561075 | - | CQ.Regalona.r1.7AG0021940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 51,309.99 Da | 36.92 | 78.88 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 365 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 326 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 205 | 6.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 146 | 453 | 2.29E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 288 | 466 | 2.5E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 287 | 1.7E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 326 | 6.8E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 135 | 161 | 0.022 | IPR000571 |
| SMART | SM00320 | WD40_4 | 245 | 282 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 243 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 453 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 413 | 2.1 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 0.0066 | IPR000571 |
| SMART | SM00320 | WD40_4 | 329 | 366 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 205 | 4.3E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 329 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 214 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 335 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 205 | 10.100143 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 135 | 162 | 13.03733 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 12.370704 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 313 | 327 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 313 | 327 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 192 | 206 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 353 | 367 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021765944.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L354 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology