Basic Information
Locus ID:
CQ.Regalona.r1.7AG0017420
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 42690819 | 42691765 | + | CQ.Regalona.r1.7AG0017420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 25,613.48 Da | 24.99 | 89.55 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 42 | 176 | 1.6E-20 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 23 | 176 | 1.22E-27 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 13 | 176 | 4.8E-20 | IPR036378 |
| SMART | SM00554 | fasc_3 | 71 | 177 | 3.9E-21 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 30 | 174 | 20.298187 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 215 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03170.1 | FASCICLIN-like arabinogalactan-protein 11. | 0 |
| RefSeq | XP_021751602.1 | fasciclin-like arabinogalactan protein 11 [Chenopodium quinoa] | 0 |
| Q8LEJ6 | Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803N3Y1 | FAS1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology