Basic Information
Locus ID:
CQ.Regalona.r1.7AG0017040
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 39899825 | 39902826 | + | CQ.Regalona.r1.7AG0017040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 83,278.55 Da | 43.89 | 68.13 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 177 | 258 | 1.59685E-25 | - |
| CDD | cd00590 | RRM_SF | 678 | 730 | 0.0022164 | - |
| Pfam | PF00855 | PWWP domain | 179 | 259 | 2.7E-15 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 659 | 746 | 1.9E-7 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 174 | 270 | 3.61E-22 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 166 | 272 | 7.0E-22 | - |
| SMART | SM00293 | PWWP_4 | 177 | 238 | 3.4E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 179 | 240 | 14.555655 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 654 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021765853.1 | uncharacterized protein LOC110730374 [Chenopodium quinoa] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N3U9 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology