Basic Information
Locus ID:
CQ.Regalona.r1.7AG0017020
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 39693718 | 39707727 | + | CQ.Regalona.r1.7AG0017020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 175,808.16 Da | 46.77 | 92.46 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1195 | 1589 | 3.50715E-114 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1241 | 1591 | 3.7E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1188 | 1584 | 3.66E-89 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 552 | 8.35E-36 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1477 | 1589 | 7.0E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 557 | 1.2E-48 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1140 | 1370 | 2.2E-38 | - |
| SMART | SM00119 | hect_3 | 1207 | 1591 | 4.9E-97 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1209 | 1591 | 60.675552 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021751621.1 | E3 ubiquitin-protein ligase UPL4-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N3U7 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology