Basic Information
Locus ID:
CQ.Regalona.r1.7AG0016040
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 26331176 | 26347801 | - | CQ.Regalona.r1.7AG0016040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 94,228.54 Da | 35.18 | 86.28 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 261 | 323 | 1.3E-11 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 498 | 539 | 5.4E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 432 | 482 | 1.2E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 493 | 542 | 2.67E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 572 | 625 | 4.43E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 724 | 815 | 8.89E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 567 | 3.7E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 630 | 1.3E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 718 | 819 | 1.7E-5 | - |
| SMART | SM00249 | PHD_3 | 571 | 628 | 0.0033 | IPR001965 |
| SMART | SM00249 | PHD_3 | 498 | 539 | 4.1E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 496 | 541 | 10.104099 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 569 | 630 | 8.5466 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 499 | 538 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021745529.1 | uncharacterized protein LOC110711460 isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N5V8 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology