Basic Information
Locus ID:
CQ.Regalona.r1.7AG0012700
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 15276232 | 15286010 | + | CQ.Regalona.r1.7AG0012700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 95,475.49 Da | 40.89 | 80.81 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16865 | Glutathione S-transferase, C-terminal domain | 708 | 795 | 3.0E-6 | IPR041695 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 180 | 390 | 1.5E-71 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 432 | 658 | 4.1E-68 | IPR031595 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 686 | 805 | 8.77E-14 | IPR036282 |
| Gene3D | G3DSA:3.40.50.11980 | - | 450 | 624 | 1.4E-224 | - |
| Gene3D | G3DSA:1.20.1050.10 | - | 688 | 816 | 5.8E-40 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 189 | 661 | 1.4E-224 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | 8.922556 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021722321.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Chenopodium quinoa] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M9H1 | ribonuclease P OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology