Basic Information
Locus ID:
CQ.Regalona.r1.7AG0010420
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 11297154 | 11309446 | - | CQ.Regalona.r1.7AG0010420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 90,836.16 Da | 50.69 | 69.66 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 556 | 832 | 2.65314E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 594 | 626 | 4.2E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 714 | 750 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 584 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 557 | 832 | 2.66E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 683 | 832 | 1.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 682 | 1.6E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 794 | 832 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 670 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 626 | 5.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 584 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 673 | 709 | 10.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 753 | 792 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 750 | 7.1E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 594 | 629 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 719 | 759 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 801 | 832 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 635 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 801 | 832 | 9.282875 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 559 | 593 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 571 | 585 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 613 | 627 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 119 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.7 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021767436.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAL8 | LisH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology