Basic Information
Locus ID:
CQ.Regalona.r1.7AG0010180
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 10971316 | 10972404 | - | CQ.Regalona.r1.7AG0010180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 39,883.47 Da | 61.84 | 71.60 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 314 | 351 | 1.99796E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 313 | 355 | 3.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 358 | 1.37E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 362 | 5.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 314 | 351 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 352 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 303 | - | - |
| Coils | Coil | Coil | 284 | 305 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology