Basic Information
Locus ID:
CQ.Regalona.r1.7AG0008030
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 8223082 | 8228634 | - | CQ.Regalona.r1.7AG0008030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 54,217.51 Da | 43.32 | 105.16 | 0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 37 | 440 | 7.8E-35 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1 | 486 | 2.35E-70 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 18 | 489 | 1.1E-86 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 480 | 39.642796 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 356 | 371 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021720267.1 | organic cation/carnitine transporter 7-like [Chenopodium quinoa] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R628 | MFS domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_107650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology