Basic Information
Locus ID:
CQ.Regalona.r1.7AG0005910
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 5539335 | 5549750 | - | CQ.Regalona.r1.7AG0005910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 158,550.73 Da | 43.61 | 77.73 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 789 | 931 | 5.5482E-49 | - |
| CDD | cd01989 | STK_N | 15 | 155 | 5.26683E-47 | - |
| CDD | cd14066 | STKc_IRAK | 519 | 772 | 7.39564E-85 | - |
| Pfam | PF00069 | Protein kinase domain | 516 | 771 | 1.0E-39 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1195 | 1412 | 9.6E-31 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 489 | 772 | 1.48E-67 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1147 | 1413 | 2.43E-63 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 789 | 906 | 5.02E-9 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 15 | 130 | 1.42E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 12 | 143 | 4.6E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1198 | 1230 | 2.5E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1147 | 1197 | 4.3E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 491 | 585 | 2.9E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 586 | 779 | 1.7E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1231 | 1421 | 3.4E-49 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 786 | 928 | 2.8E-8 | IPR014729 |
| SMART | SM00220 | serkin_6 | 1170 | 1418 | 1.3E-18 | IPR000719 |
| SMART | SM00220 | serkin_6 | 513 | 777 | 1.5E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 513 | 779 | 35.029011 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1170 | 1418 | 29.177536 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 631 | 643 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1272 | 1284 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 1039 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1135 | 1154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 387 | - | - |
| Coils | Coil | Coil | 383 | 403 | - | - |
| Coils | Coil | Coil | 455 | 482 | - | - |
| Coils | Coil | Coil | 1041 | 1061 | - | - |
| Coils | Coil | Coil | 1115 | 1143 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26150.2 | - | 0 |
| RefSeq | XP_021720503.1 | U-box domain-containing protein 35-like [Chenopodium quinoa] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KR56 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah028837 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0005910, CQ.Regalona.r1.9BG0005830 |