halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.7AG0004630

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: 50S ribosomal protein L16, chloroplastic

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7A	4326856	4327098	+	CQ.Regalona.r1.7AG0004630

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.65	9,461.15 Da	26.86	86.25	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K02878 (large subunit ribosomal protein L16)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	ATMG00090.1	structural constituent of ribosome;protein binding. ribosomal protein S3
RefSeq	XP_052112569.1	60S ribosomal protein L16, mitochondrial [Arachis duranensis]
Swiss-Prot	P27927	Large ribosomal subunit protein uL16m OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1
TrEMBL	A0A8F2YUU1	Ribosomal protein L16 OS=Arachis hypogaea OX=3818 GN=rpl16 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	5	Ah002512, Ah009417, Ah009504, Ah020365, Ah038710
Amaranthaceae	Beta vulgaris	1	BVRB_4g074590
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17398, Sbi_jg62047
Amaranthaceae	Salicornia europaea	3	Seu_jg18715, Seu_jg28763, Seu_jg661
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00013878, GOSA_00016163, GOSA_00028360, GOSA_00029402
Amaranthaceae	Suaeda glauca	4	Sgl24275, Sgl29450, Sgl65191, Sgl69606
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000010839, gene:ENSEOMG00000028111 ... gene:ENSEOMG00000042409, gene:ENSEOMG00000043072
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3BG0010450, CQ.Regalona.r1.3BG0014670 ... CQ.Regalona.r1.6AG0011920, CQ.Regalona.r1.7AG0004630, CQ.Regalona.r1.7AG0012500, CQ.Regalona.r1.8AG0015250
Anacardiaceae	Pistacia vera	2	pistato.v30286270, pistato.v30289630
Arecaceae	Cocos nucifera	1	scaffold001846G000010
Arecaceae	Phoenix dactylifera	3	gene-KEH32_p32, gene-PhdaC_p060, gene-PhdaC_p98
Asteraceae	Flaveria trinervia	4	Ftri14G27475, Ftri3G15079, Ftri5G23957, Ftri8G14513
Brassicaceae	Arabidopsis thaliana	2	ATCG00790.1, ATMG00080.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001268m.g.v1.0, Thhalv10018971m.g.v1.0
Brassicaceae	Brassica nigra	2	BniB03g050570.2N, BniS17981g060.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G0395, Ceq02G1883, Ceq03G0777, Ceq05G1627, Ceq05G1956 ... Ceq05G1964
Casuarinaceae	Casuarina glauca	2	Cgl02G0420, Cgl05G1945
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g09050
Dunaliellaceae	Dunaliella salina	1	Dusal.0377s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08520
Plantaginaceae	Plantago ovata	1	Pov_00025837
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2BG0167710, gene-QOZ80_3AG0229720 ... gene-QOZ80_7AG0563810, gene-QOZ80_7AG0564470, gene-QOZ80_7BG0588560
Poaceae	Oryza sativa	7	LOC_Os01g57958.1, LOC_Os04g16826.1, LOC_Os05g22724.1 ... LOC_Os09g19954.1, LOC_Os10g21344.1, LOC_Os12g34056.1, LOC_Os12g34128.1
Poaceae	Paspalum vaginatum	2	gene-BS78_K113900, gene-BS78_K265000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0600700
Poaceae	Sporobolus alterniflorus	6	Chr0G016280, Chr0G016730, Chr0G016940, Chr0G022780 ... Chr23G016140, Chr26G004990
Poaceae	Thinopyrum elongatum	16	Tel2E01G614000, Tel2E01G878200, Tel2E01G883400 ... Tel3E01G064200, Tel3E01G705200, Tel4E01G493000, Tel4E01G619300, Tel5E01G211800, Tel5E01G212400, Tel5E01G370900, Tel6E01G725700, Tel7E01G269600, Tel7E01G440600, Tel7E01G737400, Tel7E01G836300, Tel7E01G836500
Poaceae	Triticum dicoccoides	17	gene_TRIDC1AG063670, gene_TRIDC1BG011870 ... gene_TRIDC1BG066780, gene_TRIDC2BG038930, gene_TRIDC3AG059440, gene_TRIDC3AG061130, gene_TRIDC4AG060220, gene_TRIDC4BG002940, gene_TRIDC4BG036410, gene_TRIDC5BG016020, gene_TRIDC5BG040430, gene_TRIDC6AG010690, gene_TRIDC6AG029060, gene_TRIDC7AG039910, gene_TRIDC7AG054660, gene_TRIDC7BG050150, gene_TRIDC7BG057140
Poaceae	Triticum aestivum	17	TraesCS1A02G433800.1.cds1, TraesCS2B02G570200.1.cds1 ... TraesCS2D02G243100.1.cds1, TraesCS3D02G057900.1.cds1, TraesCS3D02G197200.1.cds1, TraesCS3D02G383100.1.cds1, TraesCS4D02G146600.1.cds1, TraesCS5B02G096800.1.cds1, TraesCS5B02G541100.1.cds1, TraesCS5B02G573100.1.cds1, TraesCS5B02G573400.1.cds1, TraesCS5D02G080000.1.cds1, TraesCS5D02G546800.1.cds1, TraesCS6A02G192300.1, TraesCS6A02G194300.1.cds1, TraesCS7B02G429300.1.cds1, TraesCS7B02G457200.1.cds1
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1381, evm.TU.LG22.279
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g01510, gene.Posoc04g08390
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_399_RagTag.2, evm.TU.Scaffold_4_RagTag.1737
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-26000
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22768, nbisL1-mrna-4540
Rhizophoraceae	Kandelia obovata	1	Maker00000671
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17541
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-24643, nbisL1-mrna-9448
Salicaceae	Populus euphratica	1	populus_peu14625
Solanaceae	Lycium barbarum	2	gene-LOC132617919, gene-LOC132639483
Solanaceae	Solanum chilense	1	SOLCI003084900
Solanaceae	Solanum pennellii	1	gene-LOC114077201
Tamaricaceae	Reaumuria soongarica	1	STRG.32170_chr09_-
Tamaricaceae	Tamarix chinensis	2	TC05G2036, TC06G0060
Zosteraceae	Zostera marina	2	Zosma05g21490.v3.1, Zosma70g00010.v3.1