Basic Information
Locus ID:
CQ.Regalona.r1.7AG0003060
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 2988733 | 2992150 | + | CQ.Regalona.r1.7AG0003060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 36,233.37 Da | 51.09 | 61.67 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 7.6E-79 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 9.3E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 4 | 109 | 3.5E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 298 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021720824.1 | ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X1 [Chenopodium quinoa] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KRV3 | Ubiquitin fusion degradation protein 1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology