Basic Information
Locus ID:
CQ.Regalona.r1.7AG0002170
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
RIBA3
Description:
riboflavin biosynthesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 2061735 | 2067984 | + | CQ.Regalona.r1.7AG0002170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 86,441.23 Da | 31.81 | 90.46 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 331 | 6.86785E-65 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 173 | 2.75545E-66 | - |
| CDD | cd00641 | GTP_cyclohydro2 | 584 | 771 | 2.75448E-99 | IPR000926 |
| Pfam | PF00925 | GTP cyclohydrolase II | 589 | 748 | 1.6E-59 | IPR032677 |
| Pfam | PF00190 | Cupin | 11 | 154 | 1.6E-28 | IPR006045 |
| Pfam | PF00926 | 3,4-dihydroxy-2-butanone 4-phosphate synthase | 385 | 577 | 5.5E-66 | IPR000422 |
| Pfam | PF00190 | Cupin | 199 | 336 | 3.6E-21 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 336 | 5.35E-46 | IPR011051 |
| SUPERFAMILY | SSF142695 | RibA-like | 583 | 749 | 4.97E-58 | IPR036144 |
| SUPERFAMILY | SSF55821 | YrdC/RibB | 381 | 579 | 9.61E-63 | IPR017945 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 194 | 6.0E-33 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 352 | 2.6E-46 | IPR014710 |
| Gene3D | G3DSA:3.40.50.10990 | GTP cyclohydrolase II | 585 | 751 | 1.6E-63 | IPR036144 |
| Gene3D | G3DSA:3.90.870.10 | DHBP synthase | 374 | 584 | 2.7E-75 | - |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 6.3E-33 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 195 | 340 | 3.1E-12 | IPR006045 |
| TIGRFAM | TIGR00505 | ribA: GTP cyclohydrolase II | 591 | 771 | 4.2E-63 | IPR000926 |
| TIGRFAM | TIGR00506 | ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase | 382 | 578 | 5.5E-55 | IPR000422 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 1.8E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 1.8E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 1.8E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 1.8E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 1.8E-12 | IPR006044 |
| Hamap | MF_00179 | GTP cyclohydrolase-2 [ribA]. | 583 | 774 | 34.941948 | IPR000926 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 797 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59750.1 | DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II. | 0 |
| RefSeq | XP_021716226.1 | monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9FN89 | Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KS36 | GTP cyclohydrolase II OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology