Basic Information
Locus ID:
CQ.Regalona.r1.6BG0028000
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
squalene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 86650845 | 86657389 | + | CQ.Regalona.r1.6BG0028000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 57,582.26 Da | 42.41 | 103.19 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08491 | Squalene epoxidase | 213 | 483 | 2.1E-121 | IPR013698 |
| Pfam | PF01266 | FAD dependent oxidoreductase | 63 | 93 | 2.5E-7 | IPR006076 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 62 | 438 | 1.13E-47 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 60 | 444 | 8.3E-35 | IPR036188 |
| PRINTS | PR00420 | Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature | 356 | 372 | 3.2E-10 | - |
| PRINTS | PR00420 | Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature | 341 | 356 | 3.2E-10 | - |
| PRINTS | PR00420 | Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature | 63 | 85 | 3.2E-10 | - |
| PRINTS | PR00420 | Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature | 212 | 227 | 3.2E-10 | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00100 (Steroid biosynthesis)
map00100 (Steroid biosynthesis)
ko00909 (Sesquiterpenoid and triterpenoid biosynthesis)
map00909 (Sesquiterpenoid and triterpenoid biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58440.1 | FAD/NAD(P)-binding oxidoreductase family protein. Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity. | 0 |
| RefSeq | XP_021717981.1 | squalene monooxygenase-like [Chenopodium quinoa] | 0 |
| O48651 | Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L6Q6 | Squalene monooxygenase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg19618, jg22685, jg26313, jg28874, jg30178, jg30181 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24024, gene_8566 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027502, Ah036603 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g014580, BVRB_6g128510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39620, Sbi_jg52602, Sbi_jg54722 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14725, Seu_jg9213 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013239, GOSA_00013264 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12582, Sgl17852, Sgl34552, Sgl39967 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003226, gene:ENSEOMG00000016502 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0020720, CQ.Regalona.r1.1BG0008220 ... |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30042770, pistato.v30162400, pistato.v30162440 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G00657, Ag1G01872, Ag3G00102, Ag6G02915, Ag8G01962 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019630 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707523, gene-LOC103713674 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2350.V1.1, AsparagusV1_03.754.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri18G31436, Ftri1G27905, Ftri3G11054, Ftri4G28981 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G58440.1, AT2G22830.1, AT4G37760.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000099m.g.v1.0, Thhalv10023406m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g05160.v2.2, Sp4g01850.v2.2, Sp7g35410.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g020980.2N, BniB04g019450.2N, BniB05g001290.2N |
| Casuarinaceae | Casuarina equisetifolia | 11 | Ceq01G0349, Ceq01G0350, Ceq01G0351, Ceq01G0352, Ceq01G1259 ... |
| Casuarinaceae | Casuarina glauca | 10 | Cgl01G0356, Cgl01G0357, Cgl01G0358, Cgl01G1405, Cgl03G1356 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0277s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g31110, gene.Thate02g31130, gene.Thate06g13850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10581, nbisL1-mrna-5631, nbisL1-mrna-8811 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2602, evm.TU.LG03.876, evm.TU.LG06.302 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001659, Pov_00007821, Pov_00012042, Pov_00037100 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08638, Lb3G21341, Lb7G32955 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4447, CH01.5055, Contig192.86 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239720, gene-QOZ80_3BG0288300 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069627 |
| Poaceae | Oryza coarctata | 4 | Oco05G007250, Oco05G007260, Oco06G007500, Oco06G007510 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g12900.1, LOC_Os03g12910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G429800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101875 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G028480, Chr04G000860, Chr07G001040, Chr12G010960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G406900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG009260, gene_TRIDC4BG041600 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G059900.1, TraesCS4B02G235500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009510_P002, Zm00001eb399370_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3992 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1724, Zma_g4101 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1609, evm.TU.LG03.591, evm.TU.LG12.1139 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g27500, gene.Posoc04g07220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.851, evm.TU.Scaffold_8_RagTag.881 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19307, nbisL1-mrna-9350 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14452, nbisL1-mrna-19413 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20602, nbisL1-mrna-6681 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.655, evm.TU.utg000018l.260 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002993, Maker00010735 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11464, nbisL1-mrna-13111 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10099, nbisL1-mrna-17098 |
| Salicaceae | Populus euphratica | 5 | populus_peu21917, populus_peu23744, populus_peu29075 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621802, gene-LOC132627737 |
| Solanaceae | Solanum chilense | 1 | SOLCI001794800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011971, gene-LOC107011974, gene-LOC107017670 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.31139_chr11_+, gene_9275 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1977, TC04G2730 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01910.v3.1 |